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De Novo Assembly

Get the most out of your data

Let us do your de novo assembly job. Our experts use state-of-the art assembly software to process your sequencing data

Using our long-year experience in de novo assemblies guarantees best possible assembly results for your assembly project.

De novo assembly of genomes

Our de novo genome assembly service chooses the optimal assembly strategy specifically adapted to the actual sequencing output and expected genome size. Eurofins assists you in generating (draft) assemblies based on shotgun Illumina data or in generating high-quality assemblies based on long-read PacBio sequencing data.

De novo assembly of transcriptomes

Our advanced transcriptome assembly pipeline reliably provide you with a detailed overview of all expressed transcripts in your species of interest.

De novo transcriptome assembly is the preferred method to find transcripts expressed in a non-model organism. Based on the particular platform used for sequencing, we perform assembly of Illumina short reads using software tools like Velvet / Oasis to provide you with the best data output.

 

 

Our deliverables at a glance:

Illumina genome assembly

  • FASTQ files  containing all Illumina reads
  • FASTA files of all assembled contigs (separate files for large contigs)
  • Statistical overview of the assembly results

PacBio genome assembly

  • Raw sequencing files as well as the subreads in FASTQ format
  • Assembled contigs and final polished assembly in FASTA format

Illumina transcriptome assembly

  • FASTQ files  containing all Illumina reads
  • FASTA files of all assembled contigs and transcripts
  • Statistical overview of the assembly results

For an individual quote or additional information, contact us.