Selected publications about transcriptome sequencing services
2016
Microminipig liver transcriptomes: Sakai, C. et al., Transcriptome of the quorum-sensing signal-degrading Rhodococcus erythropolis responds differentially to virulent and avirulent Pectobacterium atrosepticum. DOI: 10.1002/bdd.2007
2015
Expression Profiling (HiSeq): Kwasiborski, A. et al., Transcriptome of the quorum-sensing signal-degrading Rhodococcus erythropolis responds differentially to virulent and avirulent Pectobacterium atrosepticum. Heredity
2014
Expression profiling (HiSeq): Boenigk, J. et al., Effects of silver nitrate and silver nanoparticles on a planktonic community: general trends after short-term exposure. PloS one 9(4)
De novo transcriptome analysis: Højland, D. et al., Adaptation of Musca domestica L. field population to laboratory breeding causes transcriptional alterations. PloS one 9(1)
De novo transcriptome analysis: Merlot, S. et al., The metal transporter PgIREG1 from the hyperaccumulator Psychotria gabriellae is a candidate gene for nickel tolerance and accumulation. Journal of experimental botany
De novo transcriptome with FLX: Safavi-Hemami et al. Diversity of Conotoxin Gene Superfamilies in the Venomous Snail, Conus victoriae. PLoS ONE 9(2)
De novo transcriptome with FLX: Yamauchi et al. Newly Developed SNP-Based Identification Method of Hop Varieties. ASBC 72(4)
Expression profiling: Amich et al. Regulation of sulphur assimilation is essential for virulence and affects iron homeostasis of the human-pathogenic mould Aspergillus fumigatus. PLOS One, 9(8)
De novo transcriptome analysis FLX & gene expression HiSeq: Shimizu et al. Qualitative de novo analysis of full length cDNA and quantitative analysis of gene expression for common marmoset (Callithrix jacchus) transcriptomes using parallel long-read technology and short-read sequencing. PLOS One, 9(6)
2013
Small RNA sequencing: Bizuayehu et al. Characterization of Novel Precursor miRNAs Using Next Generation Sequencing and Prediction of miRNA Targets in Atlantic Halibut. PLOS ONE 8(4)
De novo transcriptome with FLX: D'Agostino et al. Genomic analysis of the native European Solanum species, S. dulcamara. BMC Genomics 14:356
Expression profiling: Gould et al. Deep sequencing of Trichomonas vaginalis during the early infection of vaginal epithelial cells and amoeboid transition. International Journal for Parasitology [Epub ahead of print]
De novo transcriptome with FLX: Passos M et al. Analysis of the leaf transcriptome of Musa acuminata during interaction with Mycospharella musicola: gene assembly, annotation and marker development. BMC Genomics 14:78
2012
De novo transcriptome with FLX: Urbarova I et al. Digital Marine Bioprospecting: Mining new neurotoxin drug candidates from the transcriptomes of cold-water sea anemones. Marine Drugs 10(10)
De novo transcriptome with HiSeq: Mutasa-Göttgens E et al. A new RNASeq-based reference transcriptome for sugar beet and its application in transcriptome-scale analysis of vernalization and gibberellin responses. BMC Genomics 13:99
De novo transcriptome with FLX: Hroudova M et al. Analysis of gene expression for microminipig liver transcriptomes using parallel long-read technology and short-read sequencing. PLoS ONE 7(4):e36420.
2011
De novo transcriptome with FLX: Windisch H et al. Thermal acclimation in Antartic fish: transcriptomic profiling of metabolic pathways. AJP - Regu Physiol 301, 5
De novo transcriptome with FLX: Kuzina V, et al. Barbarea vulgaris linkage map and quantitative trait loci for saponins, glucosinolates, hairiness and resistance to the herbivore Phyllotreta nemorum. Phytochemistry. 2011 Feb 72, 2-3
2010
De novo transcriptome with FLX: Young, N.D. et al. Elucidating the transcriptome of Fasciola hepatica – A key to fundamental and biotechnological discoveries for a neglected parasite. Biotechnology Advances (2010) 28, 222-231
De novo transcriptome with FLX: Elmer KR. et al. Rapid sympatric ecological differentiation of crater lake cichlid fishes within historic times. BMC Biol. 2010 May 12; 8:60
De novo transcriptome with FLX: Johansen SD. et al. Approaching marine bioprospecting in hexacorals by RNA deep sequencing. New Biotechnology, Vol 27
2008
Expression profiling: Torres, T.T., Ottenwälder, B. et al. Gene expression profiling by massively parallel sequencing. Genome Research (2008) 18: 172-177