Superior Sequencing from Eurofins Genomics 

 

Description

Components

Size / Concentration

*Estimated coverage

Min Vol.

Price (USD)

 Turnaround Time

Premium PCR Sequencing, Medium

3010-ONTLSM

See specs below

Est. 3000 raw reads

10 μl

$30.00

 1 biz day

Premium PCR Sequencing, Large

3010-ONTLSL

See specs below

Est. 6000 raw reads

20 μl

$60.00

 1 biz day

Premium PCR Sequencing, XL

3010-ONTLSXL

See specs below

Est. 12,000 raw reads

40 μl

$120.00

 1 biz day

 

Order Now

 

About the Service

Unlock the full potential of your linear DNA samples with Eurofins Genomics’ Premium PCR Sequencing service. Ideal for sequencing DNA ranging from 100 bp to 25 kb in length, this service offers high-quality, fragmentation-free sequencing of double-stranded linear DNA. It’s designed for customers who require reliable and rapid sequencing with no loss of information, delivering results typically within 24 hours of sample receipt.

Applications

Our Premium PCR service is perfect for the following applications:

Characterizing Mixed DNA Samples

If your sample consists of a mixture of different DNA molecules (such as barcode or variant libraries) and you need full-length, high-quality sequencing to capture all relevant sequences.

End-to-End Sequencing

Ideal when you need complete, uninterrupted sequences of your DNA, free from any fragmentation or bias.

High-Volume Sequencing

For those needing more sequencing reads than our regular services provide, our Premium PCR sequencing offers higher yields. Expect around 3,000 reads per sample with the Standard option, up to 6,000 reads with Big Premium, and 12,000 reads with Huge Premium.

Complete Data

Unlike our standard services that return only aligned reads, the Premium PCR service provides all raw sequencing data from your sample. However, please note that returning all raw reads carries a small risk of demultiplexing errors, which might result in a few reads from your sample being assigned to another customer’s dataset.

 

 

Delivered Data & File Formats

Once your sequencing run is complete, we notify you via email. You can access and download your results directly from your account dashboard. Our service includes several data outputs to ensure you have everything needed for downstream analysis:

  • Consensus Sequence (.fasta): A refined consensus sequence representing the predominant DNA molecule in your sample.
  • Annotated Consensus Sequence (.gbk): The consensus sequence with detailed feature annotations and a complete map of the DNA molecule.
  • Read Length Histogram (.png): Visualizes the distribution of read lengths from your sample.
  • Coverage Plot (.png): Shows sequencing coverage at each position in the consensus.
  • Per-Base Data (.tsv): Offers insight into the agreement between raw reads and consensus at each sequence position.
  • Raw Read Sequences (.fastq.gz): Includes all raw read data produced during sequencing. Note that, while we provide all raw reads, there is a slight chance of demultiplexing errors leading to data overlap with other customers.


Specifications

Sample Requirements
To ensure the best sequencing results, please follow the guidelines below when submitting your Premium PCR samples:

  • Sample Type: Linear, double-stranded DNA only (single-stranded DNA may result in unpredictable results).
  • DNA Purity: DNA should be purified using a column-based method (e.g., Zymo Clean & Concentrator) or magnetic beads (e.g., Ampure XP). Unpurified DNA will not be accepted.
  • Volume: A minimum of 10 μL per sample is required, submitted in 200 μL strip tubes.
  • Buffer: Use elution buffer (10 mM Tris, pH 8.5) or nuclease-free water. Avoid using buffers containing DMSO.
  • Concentration: For optimal sequencing results, send your samples at the following concentrations based on the size of your DNA insert:
    • 100 bp: 1 ng/μL
    • 200 bp: 2 ng/μL
    • 500 bp: 5 ng/μL
    • 1000 bp: 10 ng/μL
    • 2000 bp: 20 ng/μL
    • 5000 bp: 50 ng/μL
    • 10000 bp: 100 ng/μL
    • 15000 bp: 150 ng/μL
    • 20000 bp: 200 ng/μL
    • 25000 bp: 250 ng/μL

 

Verify Concentration

Please provide your Premium PCR samples at the recommended concentration and minimum volume listed in the table above. For optimal sequencing performance, we highly recommend measuring DNA concentration using a Qubit or another fluorometric method (such as a plate reader), as these provide the most reliable results.

If you choose to use spectrophotometric methods like Nanodrop, keep in mind that these tend to be less precise for DNA quantification. Samples submitted at concentrations that are too high or too low can compromise library preparation and sequencing, potentially leading to unsuccessful runs. In fact, incorrect sample concentration—often caused by reliance on Nanodrop readings—is the most frequent reason for sequencing failure. Careful quantification and proper normalization are essential for consistent, high-quality results.

 

Verify Quality

This service is designed specifically for linear, double-stranded DNA. We suggest confirming the size of your full-length DNA molecules using gel electrophoresis before submission.

 

Verity Purity

We recommend that DNA samples have a 260/280 ratio above 1.8 and a 260/230 ratio between 2.0 and 2.2. Purity can be assessed using Nanodrop or other spectrophotometric methods.

To ensure optimal sequencing performance, samples should be free of:

  • RNA (treat with RNase during extraction if needed)
  • Denaturing agents (such as guanidinium salts or phenol) and detergents (like SDS or Triton-X100)
  • Residual biological contaminants from the source organism (e.g., heme, humic acids, polyphenols)
  • Insoluble particles, visible coloration, or cloudiness

 

 

How It Works


We leverage the latest long-read sequencing technology from Oxford Nanopore Technologies to ensure you receive the highest quality data. The key steps include:

Library Preparation
We construct your sequencing library without any fragmentation using the latest v14 chemistry. This includes end-ligation for linear DNA, preserving the integrity of your sample.
Sequencing
The library is then sequenced using a primer-free protocol, employing the accurate R10.4.1 flow cells. All raw data is provided in the industry-standard .fastq.gz format.
Data Alignment & Consensus 
Our team aligns the raw reads to generate a high-accuracy consensus sequence, representing the most abundant molecular species in your sample. If multiple molecular species are present, you may analyze the included raw reads or request up to 3 additional consensus sequences for further analysis.
Custom Sequencing Options
Should you require more than 12,000 reads or more than 4 consensus sequences, consider our Custom Sequencing Service, which offers complete flexibility to meet your specific needs.

 

Important Notes

  • Quality Control: Eurofins Genomics does not include DNA extraction or quality control (QC) services. Please ensure that your samples meet the required specifications before submission.
  • Demultiplexing: As this service provides all raw reads, there is a small chance of a demultiplexing error, meaning some of your sample’s raw reads might be associated with another customer’s sequencing run.

Eurofins Genomics is dedicated to making Nanopore sequencing accessible and cost-effective for a variety of projects, including those involving small genomes. By multiplexing our single sample packages, we can optimize the output and cost-efficiency of Nanopore flowcells for both hybrid sequencing and ONT-exclusive services. This approach ensures that high-quality sequencing data is available to projects of all sizes.

FAQ / Common Questions

Go to the FAQ page for all questions and answers regarding Whole Plasmid / Nanopore Sequencing.

Testimonials

“Your sequencing reactions were perhaps the turning point in my work. Obtaining such good quality reads is rare. I have submitted many samples but this is was the best, we should explore all variable associated with the success to make it reproducible, quality, quantity of DNA to reagents used at Eurofins.”

Shyam G

Shyam G

Customer

“We got the sequences back and are quite happy with the quality. One of the orders had amplicons that we have been sequencing routinely for many years and quality from Eurofins seems to be better. Also, our overall experience with Eurofins website, sample submission, email notifications and sequencing results was positive and user friendly. We are looking forward to sequencing with Eurofins.”

Anna M.

Anna M.

Customer

“This was really impressive. Cannot believe we can get full plasmid sequencing for $15 a pop. Greatly appreciated.”

Drake R. PhD

Drake R. PhD

Customer

“Whole Plasmid Sequencing is good service at a great price point that saves me time. A great addition to the sequencing toolkit that I will be using more in the future.”

Shane A

Shane A

Customer

“Beautiful sequences”

Dr. Dorothy E.

Dr. Dorothy E.

Customer

“Speed of analysis is exceptional!”

Adeleye A.

Adeleye A.

Customer

“I have to say, your sequencing is outstanding. From ease of drop off to rapid turn around, to your customer support people if I do have a question and call. I refer everyone to Eurofins. Thanks for doing a great job!”

Amy H.

Amy H.

Customer

“Incredibly fast turnaround, and the sequences are stellar. I’m really thankful for your services, they make my job much easier.”

Joseph D.

Joseph D.

Customer

“I am consistently surprised and pleased with how quickly you can provide sequencing data! I dropped my samples off late last evening at my local dropbox and my results were waiting in my inbox when I arrived at work this morning! My PI and I were just joking that we make a comment every time about how the results come so quickly. Maybe we just aren't used to such good customer service. Great job.”

Eva J.

Eva J.

Customer

“Love your service. You guys are my go to service, and I constantly recommend you to local folks who do sequencing.”

Daniel K

Daniel K

Customer

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